Package: corMLPE 0.1.0

corMLPE: Correlation Structures for Symmetric Relational Data

Implements correlation structures for symmetric relational data (e.g. pairwise distances and dissimilarities) that interface with models using 'nlme'-style correlation structures. The maximum likelihood population effects method is described by Clarke et al. (2002) <doi:10.1198/108571102320>.

Authors:Nathaniel Pope [aut], Bill Peterman [aut, cre]

corMLPE_0.1.0.tar.gz
corMLPE_0.1.0.zip(r-4.7-x86_64)corMLPE_0.1.0.zip(r-4.7-arm64)corMLPE_0.1.0.zip(r-4.6-x86_64)corMLPE_0.1.0.zip(r-4.6-arm64)corMLPE_0.1.0.zip(r-4.5-x86_64)
corMLPE_0.1.0.tgz(r-4.6-x86_64)corMLPE_0.1.0.tgz(r-4.6-arm64)corMLPE_0.1.0.tgz(r-4.5-x86_64)corMLPE_0.1.0.tgz(r-4.5-arm64)
corMLPE_0.1.0.tar.gz(r-4.7-arm64)corMLPE_0.1.0.tar.gz(r-4.7-x86_64)corMLPE_0.1.0.tar.gz(r-4.6-arm64)corMLPE_0.1.0.tar.gz(r-4.6-x86_64)
corMLPE_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
corMLPE/json (API)

# Install 'corMLPE' in R:
install.packages('corMLPE', repos = c('https://wpeterman.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/wpeterman/cormlpe/issues

Uses libs:
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
  • openmp– GCC OpenMP (GOMP) support library

On CRAN:

Conda:

openblascppopenmp

4.21 score 6 stars 27 scripts 339 downloads 7 exports 6 dependencies

Last updated from:6cef429778. Checks:15 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK109
linux-devel-x86_64OK134
source / vignettesOK185
linux-release-arm64OK130
linux-release-x86_64OK129
macos-release-arm64OK102
macos-release-x86_64OK292
macos-oldrel-arm64OK110
macos-oldrel-x86_64OK274
windows-devel-arm64OK359
windows-devel-x86_64OK178
windows-release-arm64OK360
windows-release-x86_64OK148
windows-oldrel-x86_64OK131
wasm-releaseOK91

Exports:corMaternMLPEcorMLPEcorNMLPEcorNMLPE2simulate_corMLPE_residualssimulate_IBD_corMLPEt

Dependencies:latticeMASSMatrixnlmeRcppRcppArmadillo

Readme and manuals

Help Manual

Help pageTopics
Correlation Structure for Grouped Matern MLPE Modelsas.matrix.corMaternMLPE corMaternMLPE
Correlation structure for symmetric relational dataas.matrix.corMLPE corMLPE
Correlation Structure for Clustered NMLPE Modelsas.matrix.corNMLPE corNMLPE
Correlation Structure for Reduced-Basis NMLPE Modelsas.matrix.corNMLPE2 corNMLPE2
Methods for Internal `dgCMatrix_corMLPE` ObjectsdgCMatrix_corMLPE-methods t,dgCMatrix_corMLPE-method [,dgCMatrix_corMLPE,index,missing,logical-method [,dgCMatrix_corMLPE,missing,index,logical-method
Simulate data from a fitted corMLPE modelsimulate_corMLPE_residuals
Simulate data from an isolation-by-distance model with MLPE correlation structuresimulate_IBD_corMLPE